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RISmed (version 2.3.0)

Download Content from NCBI Databases

Description

A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.

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Version

Install

install.packages('RISmed')

Monthly Downloads

643

Version

2.3.0

License

GPL (>= 2)

Maintainer

S A Kovalchik

Last Published

July 5th, 2021

Functions in RISmed (2.3.0)

ArticleId-methods

~~ Methods for Function ArticleId in Package RISmed ~~
Author-methods

~~ Methods for Function Author in Package RISmed ~~
ArticleTitle

Extracts ArticleTitle from Medline object.
AbstractText

Extracts AbstractText from Medline object.
ArticleId

Extracts ArticleId from Medline object.
Author

Extracts Author from Medline object.
Affiliation

Extracts Affiliation from Medline object.
ArticleTitle-methods

~~ Methods for Function ArticleTitle in Package RISmed ~~
AbstractText-methods

~~ Methods for Function AbstractText in Package RISmed ~~
Affiliation-methods

~~ Methods for Function Affiliation in Package RISmed ~~
Citations-methods

~~ Methods for Function Citations in Package RISmed ~~
DayPubmed

Extracts DayPubmed from Medline object.
DayArticleDate

Extracts DayArticleDate from Medline object.
COIStatement

Extracts COIStatement from Medline object.
COIStatement-methods

~~ Methods for Function COIStatement in Package RISmed ~~
DOI

Extracts DOI from Medline object.
Citations

List of citing article titles where listed in PubMed.
DayArticleDate-methods

~~ Methods for Function DayArticleDate in Package RISmed ~~
DayPubmed-methods

~~ Methods for Function DayPubmed in Package RISmed ~~
DayAccepted-methods

~~ Methods for Function DayAccepted in Package RISmed ~~
DOI-methods

~~ Methods for Function DOI in Package RISmed ~~
EUtilsSummary

Get summary of NCBI EUtils query
HourMedline-methods

~~ Methods for Function HourMedline in Package RISmed ~~
EUtilsSummary-class

Class "EUtilsSummary"
DayEntrez

Extracts DayEntrez from Medline object.
DayAccepted

Extracts DayAccepted from Medline object.
DayEntrez-methods

~~ Methods for Function DayEntrez in Package RISmed ~~
DayPmc-methods

~~ Methods for Function DayPmc in Package RISmed ~~
Country

Extracts Country from Medline object.
Country-methods

~~ Methods for Function Country in Package RISmed ~~
HourMedline

Extracts HourMedline from Medline object.
DayEpublish-methods

~~ Methods for Function DayEpublish in Package RISmed ~~
EUtilsQuery

Construct URL to make NCBI EUtils query
DayPmc

Extracts DayPmc from Medline object.
EUtilsGet

Results of an NCBI EUtils query
DayEpublish

Extracts DayEpublish from Medline object.
DayReceived-methods

~~ Methods for Function DayReceived in Package RISmed ~~
Issue-methods

~~ Methods for Function Issue in Package RISmed ~~
HourPmc-methods

~~ Methods for Function HourPmc in Package RISmed ~~
DayMedline-methods

~~ Methods for Function DayMedline in Package RISmed ~~
Issue

Extracts Issue from Medline object.
MinuteReceived-methods

~~ Methods for Function MinuteReceived in Package RISmed ~~
Mesh

Extracts Mesh headings from Medline object.
MonthEpublish

Extracts MonthEpublish from Medline object.
MinutePubmed

Extracts MinutePubmed from Medline object.
HourEpublish

Extracts HourEpublish from Medline object.
DayReceived

Extracts DayReceived from Medline object.
ISSN-methods

~~ Methods for Function ISSN in Package RISmed ~~
MinuteAccepted-methods

~~ Methods for Function MinuteAccepted in Package RISmed ~~
HourEpublish-methods

~~ Methods for Function HourEpublish in Package RISmed ~~
MonthMedline-methods

~~ Methods for Function MonthMedline in Package RISmed ~~
HourPmc

Extracts HourPmc from Medline object.
DayPpublish-methods

~~ Methods for Function DayPpublish in Package RISmed ~~
MinuteEntrez

Extracts MinuteEntrez from Medline object.
MinuteMedline

Extracts MinuteMedline from Medline object.
MonthReceived

Extracts MonthReceived from Medline object.
MinuteReceived

Extracts MinuteReceived from Medline object.
ISSN

Extracts ISSN from Medline object.
MinuteEpublish-methods

~~ Methods for Function MinuteEpublish in Package RISmed ~~
MonthAccepted-methods

~~ Methods for Function MonthAccepted in Package RISmed ~~
MinutePmc-methods

~~ Methods for Function MinutePmc in Package RISmed ~~
MonthRevised-methods

~~ Methods for Function MonthRevised in Package RISmed ~~
HourPubmed-methods

~~ Methods for Function HourPubmed in Package RISmed ~~
HourAccepted-methods

~~ Methods for Function HourAccepted in Package RISmed ~~
GrantID

Extracts list of GrantID info Medline object including GrantID and GrantAgency where listed in PubMed.
DayPpublish

Extracts DayPpublish from Medline object.
HourAccepted

Extracts HourAccepted from Medline object.
GrantID-methods

~~ Methods for Function GrantID in Package RISmed ~~
Volume

Extracts Volume from Medline object.
HourPubmed

Extracts HourPubmed from Medline object.
Volume-methods

~~ Methods for Function Volume in Package RISmed ~~
HourPpublish-methods

~~ Methods for Function HourPpublish in Package RISmed ~~
HourPpublish

Extracts HourPpublish from Medline object.
YearMedline-methods

~~ Methods for Function YearMedline in Package RISmed ~~
YearMedline

Extracts YearMedline from Medline object.
DayMedline

Extracts DayMedline from Medline object.
YearRevised-methods

~~ Methods for Function YearRevised in Package RISmed ~~
MonthPmc

Extracts MonthPmc from Medline object.
PublicationType

Extracts PublicationType from Medline object.
MonthPpublish-methods

~~ Methods for Function MonthPpublish in Package RISmed ~~
Language-methods

~~ Methods for Function Language in Package RISmed ~~
MonthPpublish

Extracts MonthPpublish from Medline object.
MedlineTA

Extracts MedlineTA from Medline object.
MonthEntrez

Extracts MonthEntrez from Medline object.
Language

Extracts Language from Medline object.
MonthPubDate-methods

~~ Methods for Function MonthPubDate in Package RISmed ~~
Mesh-methods

~~ Methods for Function Mesh in Package RISmed ~~
MonthEpublish-methods

~~ Methods for Function MonthEpublish in Package RISmed ~~
CopyrightInformation-methods

~~ Methods for Function CopyrightInformation in Package RISmed ~~
Medline-class

Class "Medline"
NlmUniqueID

Extracts NlmUniqueID from Medline object.
YearRevised

Extracts YearRevised from Medline object.
YearAccepted-methods

~~ Methods for Function YearAccepted in Package RISmed ~~
PMID-methods

~~ Methods for Function PMID in Package RISmed ~~
YearAccepted

Extracts YearAccepted from Medline object.
YearPmc

Extracts YearPmc from Medline object.
MedlinePgn-methods

~~ Methods for Function MedlinePgn in Package RISmed ~~
ELocationID-methods

~~ Methods for Function ELocationID in Package RISmed ~~
YearPmc-methods

~~ Methods for Function YearPmc in Package RISmed ~~
CopyrightInformation

Extracts CopyrightInformation from Medline object.
DayPubDate

Extracts DayPubDate from Medline object.
DayRevised

Extracts DayRevised from Medline object.
DayPubDate-methods

~~ Methods for Function DayPubDate in Package RISmed ~~
ELocationID

Extracts ELocationID from Medline object.
DayRevised-methods

~~ Methods for Function DayRevised in Package RISmed ~~
Query-methods

~~ Methods for Function Query in Package RISmed ~~
YearEpublish-methods

~~ Methods for Function YearEpublish in Package RISmed ~~
HourReceived-methods

~~ Methods for Function HourReceived in Package RISmed ~~
YearPubDate

Extracts YearPubDate from Medline object.
YearPubDate-methods

~~ Methods for Function YearPubDate in Package RISmed ~~
MinuteEpublish

Extracts MinuteEpublish from Medline object.
MinuteAccepted

Extracts MinuteAccepted from Medline object.
MinuteEntrez-methods

~~ Methods for Function MinuteEntrez in Package RISmed ~~
MinuteMedline-methods

~~ Methods for Function MinuteMedline in Package RISmed ~~
print-methods

Print method for EUtilsSummary object
print-Medline

Print method for Medline object
YearEpublish

Extracts YearEpublish from Medline object.
HourEntrez-methods

~~ Methods for Function HourEntrez in Package RISmed ~~
ISOAbbreviation-methods

~~ Methods for Function ISOAbbreviation in Package RISmed ~~
HourEntrez

Extracts HourEntrez from Medline object.
ISOAbbreviation

Extracts ISOAbbreviation from Medline object.
MonthMedline

Extracts MonthMedline from Medline object.
MonthPmc-methods

~~ Methods for Function MonthPmc in Package RISmed ~~
show-methods

Show method for EUtilsSummary object
show-Medline

Show method for Medline object
YearEntrez-methods

~~ Methods for Function YearEntrez in Package RISmed ~~
Query

Extract Query from Medline object.
PublicationStatus

Extracts PublicationStatus from Medline object.
RISmed-package

Download content from NCBI databases.
HourReceived

Extracts HourReceived from Medline object.
Keywords-methods

~~ Methods for Function Keywords in Package RISmed ~~
PublicationType-methods

~~ Methods for Function PublicationType in Package RISmed ~~
YearPpublish

Extracts YearPpublish from Medline object.
YearEntrez

Extracts YearEntrez from Medline object.
YearPpublish-methods

~~ Methods for Function YearPpublish in Package RISmed ~~
ISSNLinking-methods

~~ Methods for Function ISSNLinking in Package RISmed ~~
QueryCount

Count of record results for EUtilsQuery
c,Medline-method

Concatenate Medline
MonthArticleDate

Extracts MonthArticleDate from Medline object.
MinutePmc

Extracts MinutePmc from Medline object.
MedlinePgn

Extracts MedlinePgn from Medline object.
Keywords

Extracts list of Keywords info from Medline object.
MedlineTA-methods

~~ Methods for Function MedlineTA in Package RISmed ~~
MinutePpublish-methods

~~ Methods for Function MinutePpublish in Package RISmed ~~
MonthEntrez-methods

~~ Methods for Function MonthEntrez in Package RISmed ~~
ISSNLinking

Extracts ISSNLinking from Medline object.
MonthReceived-methods

~~ Methods for Function MonthReceived in Package RISmed ~~
MonthPubmed

Extracts MonthPubmed from Medline object.
PMID

Extracts PMID from Medline object.
PublicationStatus-methods

~~ Methods for Function PublicationStatus in Package RISmed ~~
YearReceived-methods

~~ Methods for Function YearReceived in Package RISmed ~~
MinutePpublish

Extracts MinutePpublish from Medline object.
QueryId

Get ids from EUtilsQuery
YearReceived

Extracts YearReceived from Medline object.
MonthAccepted

Extracts MonthAccepted from Medline object.
MonthArticleDate-methods

~~ Methods for Function MonthArticleDate in Package RISmed ~~
MonthPubDate

Extracts MonthPubDate from Medline object.
MinutePubmed-methods

~~ Methods for Function MinutePubmed in Package RISmed ~~
MonthPubmed-methods

~~ Methods for Function MonthPubmed in Package RISmed ~~
MonthRevised

Extracts MonthRevised from Medline object.
Title-methods

~~ Methods for Function Title in Package RISmed ~~
Title

Extracts Title from Medline object.
NlmUniqueID-methods

~~ Methods for Function NlmUniqueID in Package RISmed ~~
YearArticleDate

Extracts YearArticleDate from Medline object.
YearArticleDate-methods

~~ Methods for Function YearArticleDate in Package RISmed ~~
YearPubmed

Extracts YearPubmed from Medline object.
summary-methods

Summary method for EUtilsSummary object
YearPubmed-methods

~~ Methods for Function YearPubmed in Package RISmed ~~
myeloma

Example of results from EUtilsGet
QueryTranslation

Get the NCBI query translation from EUtilsQuery