Learn R Programming

taxotools

Tools include matching and merging taxonomic lists, casting and melting scientific names, managing taxonomic lists from GBIF and ITIS, harvesting names from wikipedia and fuzzy matching.

Copy Link

Version

Install

install.packages('taxotools')

Monthly Downloads

223

Version

0.0.139

License

CC0

Maintainer

Vijay Barve

Last Published

April 4th, 2024

Functions in taxotools (0.0.139)

melt_cs_field

Generate a list melting character (comma) separated field values into multiple records
get_synonyms

get synonyms
list_higher_taxo

Get higher taxonomy data for list of names
melt_canonical

Deconstruct canonical names
match_lists

match two taxonomic lists
melt_scientificname

Melt scientific name into fields
merge_lists

merge two lists of names
list_wiki_syn

Get Wikipedia Synonyms for list of names
list_itis_syn

Get ITIS Synonyms for list of names
guess_taxo_rank

Guess the taxonomic rank of Scientific Name
synonymize_subspecies

Convert all subspecies into synonyms of the species
taxo_fuzzy_match

taxo_fuzzy_match
resolve_names

Resolve canonical names against GNA
taxo2DwC

Taxolist to Darwin Core (DwC)
taxotools-package

taxotools: Taxonomic List Processing
wiki2taxo

Wikipedia list to taxo
syn2taxo

Synonym list to taxolist
taxo2doc

Taxolist to document
taxo2syn

Taxolist to Synonym list
cast_canonical

Construct canonical names
expand_name

Expands Scientific name
get_itis_syn

Get Integrated Taxonomic Information System 'ITIS' Synonyms for a Scientific Name
build_gen_syn

Build genus level synonyms
DwC2taxo

Darwin Core to Taxolist format
compact_ids

compact id numbers
cast_scientificname

Cast scientific name using taxonomic fields
cast_cs_field

Build a character (comma) separated List within field
check_scientific

Parse and resolve a scientific name string
get_accepted_names

get_accepted_names