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phyclust (version 0.1-9)

.boundary.method: Boundary methods for population proportions

Description

Methods used in EM Algorithms to deal with boundary problems of population proportions, $\eta_k$. The first element is the default value. This is a read-only object and the elemental order is followed in C.

Usage

.boundary.method

Arguments

format

A character vector contains implemented boundary methods in C.

Details

The boundary value 0 of the population proportions makes the log likelihood as -Inf. Since degeneracy of subpopulations can affect the maximizing processes in EM steps. This problem is usually caused by bad initializations, and may suggest that number of cluster $K$ may be too large.

Two methods have been implemented when any $\eta_k$ less than the lower bound ($1/N$ or $1e-16$). The ADJUST (default) will adjust the $\eta_k$ to the lower bound, and the IGNORE will stop the iterations and return errors.

References

Phylogenetic Clustering Website: http://thirteen-01.stat.iastate.edu/snoweye/phyclust/

See Also

.show.option, .init.procedure, .init.method, .EMControl, phyclust.

Examples

Run this code
.boundary.method

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