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easyRNASeq (version 2.8.2)

easyRNASeq-global-variables: Objects created when the package is attached.

Description

The package creates the following objects when attached
  • GTF.FIELDS
  • ANNOTATION.TYPE

Arguments

libname
a character string giving the library directory where the package defining the namespace was found.
pkgname
a character string giving the name of the package.

Details

These objects hold the following information
  • GTF.FIELDSc("gene_id","transcript_id","exon_id","gene_name")
  • ANNOTATION.TYPEc(mRNA="mRNA",exon="exon")
and are designed as global variables to expose the fact that they are hardcoded. There exist as placeholder in case a user would require different values for these.

See Also

.onAttach in the base package.