AMPSequences.response


  A data frame containing the antimicrobial activity for each peptide in
  the <code><a rd-options="" href="/link/AMPSequences?package=peplib&version=1.5.1" data-mini-rdoc="peplib::AMPSequences">AMPSequences</a></code> dataset.


datasets

This package provides a variety of methods for dealing
with analysis of peptide library data, including clustering,
motif finding, and QSAR model fitting.

Andrew White

peplib

Peptide Library Analysis Methods

AMPSequences.response function

<dl>
    <dt><code>Sequence</code></dt><dd>The sequence name</dd> <dt><code>E-coli</code></dt><dd>The activity on organism E. coli</dd> <dt><code>N-gonorrhoeae-F.62.</code></dt><dd>The activity on organism N. gonorrhoeae</dd> <dt><code>N-gonorrhoeae-FA.19.</code></dt><dd>The activity on organism N. gonorrhoeae</dd> <dt><code>L-monocytogenes</code></dt><dd>The activity on organism L. monocytogenes</dd> <dt><code>C-albicans</code></dt><dd>The activity on organism C. albicans</dd> <dt><code>P-aeruginosa</code></dt><dd>The activity on organism P. aeruginosa</dd> <dt><code>Cytotoxicity</code></dt><dd>Cytotoxicity of peptide</dd> <dt><code>Hemolysis</code></dt><dd>Negative effect on red blood cell</dd> </dl> 

Format

Nathan Ostberg, Yiannis Kaznessis, "Protegrin structure-activity
  relationships: using homology modelsp of synthetic sequences to
  determine structural characteristics important for activity", Peptides,
  Volume 26, Issue 2, February 2005, Pages 197-206, ISSN 0196-9781,
  10.1016/j.peptides.2004.09.020.

AMPSequences.response: Antimicrobial peptide sequence responses

Description

Usage

Arguments

Format

Source