easyRNASeq (version 2.8.2)

easyRNASeq RnaSeqParam accessors: Accessors for RnaSeqParam class

Description

These functions and generics define `accessors` (to get and set values) for RnaSeqParam objects within the easyRNASeq package. Implemented are:

• annotParam
• bamParam
• countBy
• datasource
• paired
• precision
• stranded
• yieldSize

Usage

## S3 method for class 'RnaSeqParam':
yieldSize(object)

Arguments

object

An object derived from class RnaSeqParam.

Value

• The value of the corresponding slot.

See Also

• TheAnnotParamclass
• TheBamParamclass
• TheRnaSeqParamclass

The BamParam yieldSize accessor

Examples

## create the necessary AnnotParam
annotParam <- AnnotParam(
                datasource=system.file(
                                "extdata",
                                "Dmel-mRNA-exon-r5.52.gff3",
                                package="RnaSeqTutorial"))

## create the RnaSeqParam
rsp <- RnaSeqParam(annotParam=annotParam)
## get the yieldSize Parameter
ysize <-yieldSize(rsp)