DAVIDCluster-class: class "DAVIDCluster
Description
This virtual class represents the output of a DAVID
"Cluster" report, with "DAVIDTermCluster" and
"DAVIDGeneCluster" as possible heirs, according to the
report used.
Type
This class is a "Virtual" one.Extends
- DAVIDResult in the conceptual way.
Heirs
-
DAVIDTermCluster: DAVID's
Functional Annotation Clustering report.
-
DAVIDGeneCluster: DAVID's Functional
Classification Tool report.
Slots
cluster- named list with the
different clustered terms/genes: Members, represented as
DAVIDGenes object; and EnrichmentScore, a numeric with
DAVID cluster enrichment score.
Methods
showsignature(object="DAVIDCluster"):
basic console output.summarysignature(object="DAVIDCluster"):
basic summary console output.initializesignature(object="DAVIDCluster",
fileName="character"): basic cluster report file
parser.clustersignature(object="DAVIDCluster"):
getter for the corresponding slot.enrichmentsignature(object="DAVIDCluster"):
obtain the enrichment score of each cluster.memberssignature(object="DAVIDCluster"):
obtain the corresponding cluster members.
References
- The Database for Annotation,
Visualization and Integrated Discovery
(david.abcc.ncifcrf.gov)
- Huang, D. W.; Sherman, B.
T.; Tan, Q.; Kir, J.; Liu, D.; Bryant, D.; Guo, Y.;
Stephens, R.; Baseler, M. W.; Lane, H. C.; Lempicki, R.
A. DAVID Bioinformatics Resources: expanded annotation
database and novel algorithms to better extract biology
from large gene lists. Nucleic Acids Res, Laboratory of
Immunopathogenesis and Bioinformatics, SAIC-Frederick,
Inc., National Cancer Institute at Frederick, MD 21702,
USA., 2007, 35, W169-W175
See Also
Other DAVIDCluster: cluster,
cluster, dictionary,
dictionary, enrichment,
enrichment, members,
members, membership,
membership, subset,
subset, summary,
summary, summary,
summary