DEFAULT_CIRC_SEQS


The <code>DEFAULT_CIRC_SEQS</code> character vector contains strings that are
normally used by major repositories as the names of chromosomes that
are typically circular, it is available as a convenience so that users
can us it as a default value for <code>circ_seqs</code> arguments, and
append to it as needed.


datasets

A set of tools and methods for making and manipulating
transcript centric annotations. With these tools the user can
easily download the genomic locations of the transcripts, exons
and cds of a given organism, from either the UCSC Genome
Browser or a BioMart database (more sources will be supported
in the future). This information is then stored in a local
database that keeps track of the relationship between
transcripts, exons, cds and genes. Flexible methods are
provided for extracting the desired features in a convenient
format.

DEFAULT_CIRC_SEQS: character vector: strings that are usually circular chromosomes

Description

Usage

Arguments

See Also

Examples