DESeqTransform

DESeqTransform-class

SummarizedExperiment

This constructor function would not typically be used by "end users".
This simple class extends the RangedSummarizedExperiment class of the
SummarizedExperiment package.
It is used by <code><a href="/link/rlog?package=DESeq&version=1.24.0" rd-options="" data-mini-rdoc="DESeq::rlog">rlog</a></code> and
<code><a href="/link/varianceStabilizingTransformation?package=DESeq&version=1.24.0" rd-options="" data-mini-rdoc="DESeq::varianceStabilizingTransformation">varianceStabilizingTransformation</a></code>
to wrap up the results into a class for downstream methods,
such as <code><a href="/link/plotPCA?package=DESeq&version=1.24.0" rd-options="" data-mini-rdoc="DESeq::plotPCA">plotPCA</a></code>.

Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial
distribution

Simon Anders

DESeq

Differential gene expression analysis based on the negative
binomial distribution

DESeqTransform-class function

This constructor function would not typically be used by "end users".
This simple class extends the RangedSummarizedExperiment class of the
SummarizedExperiment package.
It is used by <code><a href="rlog" rd-options="">rlog</a></code> and
<code><a href="varianceStabilizingTransformation" rd-options="">varianceStabilizingTransformation</a></code>
to wrap up the results into a class for downstream methods,
such as <code><a href="plotPCA" rd-options="">plotPCA</a></code>.

DESeqTransform-class: DESeqTransform object and constructor

Description

Usage

Arguments

Value