GDS-class

classes

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data.  Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data.  GEOquery is the bridge between GEO and BioConductor.

Sean Davis

GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

GDS-class function

Objects can be created by calls of the form <code>new("GDS", ...)</code>

Objects from the Class

<dl>
    <dt><code>gpl</code>:</dt><dd>Object of class <code>"GPL"</code></dd> <dt><code>dataTable</code>:</dt><dd>Object of class <code>"GEODataTable"</code>
      containing the data table for the GDS</dd> <dt><code>header</code>:</dt><dd>Object of class <code>"list"</code> containing the
      metadata for the GDS; can be accessed via the <code>Meta</code> accessor</dd> </dl> 

Slots

Extends

No methods defined with class "GDS" in the signature, but methods
applying to GEOData are also applicable here.

GDS-class: Class "GDS"

Description

Arguments

Objects from the Class

Slots

Extends

Methods

See Also