GOmnplot: A function to plot by group means against each other.
Description
For a two sample comparison, as determined by group, and a
specified KEGG pathway or GO category, per group means are computed
and plotted against each other.
Usage
GOmnplot(x, eset, data = "hgu133plus2", group, ...)
KEGGmnplot(x, eset, data = "hgu133plus2", group, ...)
Arguments
x
The name of the KEGG pathway or GO category.
eset
An ExpressionSet containing the data.
data
The name of the chip that was used to provide the data.
group
The variable indicating group membership, should have two
different values.
...
Extra parameters to pass to the call to plot.
Value
The matrix of per group means, for each probe.
Details
All probes in eset that map to the given category are
determined. Then per group, per probe means are computed and plotted
against each other. Extra parameters can be passed to the plot
function via the dots argument.