GenomicInteractions (version 1.6.2)

GenomicInteractions: Function to create a GenomicInteractions object

Description

Create GenomicInteractions objects from two GRanges ojects.

Usage

GenomicInteractions(anchor1, anchor2, counts, ...)
"GenomicInteractions"(anchor1, anchor2, counts, ...)
"GenomicInteractions"(anchor1)
"GenomicInteractions"(anchor1, anchor2)
"GenomicInteractions"(anchor1, anchor2, counts, ...)
"GenomicInteractions"(anchor1, anchor2, counts, ...)
"GenomicInteractions"(anchor1, anchor2, counts, ...)
"GenomicInteractions"(anchor1, anchor2, counts, ...)

Arguments

anchor1, anchor2

GRanges objects.

counts

An integer vector, defaults to 1.

...

Additional data to be added to mcols

Value

a GenomicInteractions object

Examples

library(GenomicRanges)

anchor.one = GRanges(c("chr1", "chr1", "chr1", "chr1"), IRanges(c(10, 20, 30, 20), width=5))
anchor.two = GRanges(c("chr1", "chr1", "chr1", "chr2"), IRanges(c(100, 200, 300, 50), width=5))
interaction_counts = sample(1:10, 4)
test <- GenomicInteractions(anchor.one, anchor.two, counts=interaction_counts)