KEGGGraphics-class

 A class to represent 'graphics' element in KGML files 

classes

KEGGGraph is an interface between KEGG pathway and graph
object as well as a collection of tools to analyze, dissect and
visualize these graphs. It parses the regularly updated KGML
(KEGG XML) files into graph models maintaining all essential
pathway attributes. The package offers functionalities
including parsing, graph operation, visualization and etc.

Jitao David Zhang

KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor

KEGGGraphics-class function

This method is mainly used to extract visualization information from
  KGML files. Objects can be created by calling <code><a rd-options="" href="/link/parseGraphics?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::parseGraphics">parseGraphics</a></code>

Objects from the Class

<dl>
    <dt><code>name</code>:</dt><dd>Object of class <code>"character"</code> graphics name </dd> <dt><code>x</code>:</dt><dd>Object of class <code>"integer"</code> x coordinate in
      KEGG figure </dd> <dt><code>y</code>:</dt><dd>Object of class <code>"integer"</code> y coordinate in
      KEGG figure </dd> <dt><code>type</code>:</dt><dd>Object of class <code>"character"</code> graphics type
    (shape)</dd> <dt><code>width</code>:</dt><dd>Object of class <code>"integer"</code> witdh of the symbol </dd> <dt><code>height</code>:</dt><dd>Object of class <code>"integer"</code> height of the
    symbol</dd> <dt><code>fgcolor</code>:</dt><dd>Object of class <code>"character"</code> foreground
    color</dd> <dt><code>bgcolor</code>:</dt><dd>Object of class <code>"character"</code> background
    color</dd> </dl> 

Slots

A class to represent 'graphics' element in KGML files

KEGGGraphics-class: class 'KEGGGraphics'

Description

Arguments

Objects from the Class

Slots

References

See Also

Examples