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PRIST (version 0.925)

NanoStringAssay: NanoString Assay Constructor

Description

Constructor for a NanoStringAssay

Usage

NanoStringAssay(rccfiles = NULL, keyfile = NULL, idvars, primerid,
  measurement = "Count", ncells = NULL, id = NULL, cellvars = NULL,
  featurevars = NULL, phenovars = NULL, post.process.function = NULL, ...)

Arguments

rccfiles

A list of rcc files with full paths

keyfile

A full path to a keyfile

idvars

See SingleCellAssay

primerid

See SingleCellAssay

measurement

The measurement column for raw data.

ncells

A character specifying the column which gives the number of cells per well

id

An identifier for the resulting object. Should be a meaningful name

cellvars

See SingleCellAssay

featurevars

See SingleCellAssay

phenovars

See SingleCellAssay

post.process.function

function applied to data.frame of all rcc files, before the NanostringAssay object is constructed.

...

Additional parameters passed to SingleCellAssay constructor

Value

A NanoStringAssay object

Details

Constructs a NanoStringAssay object. Differs little from the FluidigmAssay constructor. Accepts a function for post-processing. mapping argument has been removed as well for simplicity.