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RVsharing (version 1.7.0)

Probability of Sharing Rare Variants among Relatives

Description

Computes estimates of the probability of related individuals sharing a rare variant.

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Version

Install

install.packages('RVsharing')

Monthly Downloads

84

Version

1.7.0

License

GPL-2

Maintainer

Alexandre BUREAU

Last Published

February 9th, 2017

Functions in RVsharing (1.7.0)

GeneDropSim.fn

Estimation of the probability of sharing of a rare variant by gene dropping in a pedigree
GeneDropSimExcessSharing.fn

Estimation of the probability of sharing of a rare variant by gene dropping in a pedigree
GeneDropSim.allsubsets.fn

Estimation of the probability of sharing of a rare variant by gene dropping in a pedigree
GeneDrop-method

Gene Dropping method
RVsharing

Probability of sharing a rare variant among relatives
get.psubset

Probability of sharing of rare variants in a subset of families
RVgene

Probability of sharing of rare variants in a family sample within a gene
RVgene_allshare

Probability of sharing of rare variants among all affected relatives in a family sample within a gene
Trio-class

Trio Class
ped2trio

Conversion of a
ComputeKinshipPropCoef-method

Ratio of excess kinship among descendants over mean kinship among founders
ex.ped.mat

Example genotype data
ped.list

Example pedigrees