Rbowtie (version 1.12.0)

Rbowtie-package: R bowtie wrapper

Description

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool.

The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly. The QuasR package provides a simpler interface then Rbowtie and covers the whole analysis workflow of typical ultra-high throughput sequencing experiments, starting from the raw sequence reads, over pre-processing and alignment, up to quantification.

Details

See packageDescription('Rbowtie') for package details.

See Also

bowtie, SpliceMap

Examples

## Not run: 
#     example(bowtie)
#     example(SpliceMap)
# ## End(Not run)