Graph-class

Graph

The Graph class inherits from <code><a rd-options="Matrix:sparseMatrix" href="/link/dgCMatrix?package=SeuratObject&version=4.0.1&to=Matrix%3AsparseMatrix" data-mini-rdoc="Matrix:sparseMatrix::dgCMatrix">dgCMatrix</a></code>.
We do this to enable future expandability of graphs.

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

Andrew Butler

Tim Stuart

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Yuhan Hao

Graph-class function

<dl class="dl-horizontal">
<dt><code>assay.used</code></dt><dd>Optional name of assay used to generate <code>Graph</code> object</dd>
</dl>

Slots

The Graph class inherits from <code><a rd-options='Matrix:sparseMatrix' href='dgCMatrix'>dgCMatrix</a></code>.
We do this to enable future expandability of graphs.

The Graph Class — Graph-class

The Graph Class

Graph-class: The Graph Class

Description

Arguments

Slots

See Also