JackStrawData-class

JackStrawData

The JackStrawData is used to store the results of a JackStraw computation.

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

Andrew Butler

Tim Stuart

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Yuhan Hao

JackStrawData-class function

<dl class="dl-horizontal">
<dt><code>empirical.p.values</code></dt><dd>Empirical p-values</dd></dl><dt><code>fake.reduction.scores</code></dt><dd>Fake reduction scores</dd><dt><code>empirical.p.values.full</code></dt><dd>Empirical p-values on full</dd><dt><code>overall.p.values</code></dt><dd>Overall p-values from ScoreJackStraw</dd>

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The JackStrawData Class — JackStrawData-class

The JackStrawData Class

JackStrawData-class: The JackStrawData Class

Description

Arguments

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