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SuperGauss (version 2.0.3)

Superfast Likelihood Inference for Stationary Gaussian Time Series

Description

Likelihood evaluations for stationary Gaussian time series are typically obtained via the Durbin-Levinson algorithm, which scales as O(n^2) in the number of time series observations. This package provides a "superfast" O(n log^2 n) algorithm written in C++, crossing over with Durbin-Levinson around n = 300. Efficient implementations of the score and Hessian functions are also provided, leading to superfast versions of inference algorithms such as Newton-Raphson and Hamiltonian Monte Carlo. The C++ code provides a Toeplitz matrix class packaged as a header-only library, to simplify low-level usage in other packages and outside of R.

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Version

Install

install.packages('SuperGauss')

Monthly Downloads

235

Version

2.0.3

License

GPL-3

Maintainer

Martin Lysy

Last Published

February 24th, 2022

Functions in SuperGauss (2.0.3)

Toeplitz

Constructor and methods for Toeplitz matrix objects.
Circulant

Constructor and methods for Circulant matrix objects.
acf2msd

Convert autocorrelation of stationary increments to mean squared displacement of posititions.
SuperGauss-package

Superfast inference for stationary Gaussian time series.
SuperGauss-defunct

Defunct functions in SuperGauss.
acf2incr

Convert position autocorrelations to increment autocorrelations.
NormalCirculant

Multivariate normal with Circulant variance matrix.
Cholesky

Cholesky multiplication with Toeplitz variance matrices.
dnormtz

Density of a multivariate normal with Toeplitz variance matrix.
fbm_msd

Mean square displacement of fractional Brownian motion.
NormalToeplitz

Multivariate normal with Toeplitz variance matrix.
toep.mult

Toeplitz matrix multiplication.
rnormtz

Simulate a stationary Gaussian time series.
matern_acf

Matern autocorrelation function.
pex_acf

Power-exponential autocorrelation function.
msd2acf

Convert mean square displacement of positions to autocorrelation of increments.