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qtl (version 1.39-5)

addloctocross: Add phenotype location into a cross object

Description

Add phenotype location(s) into a cross object (with eQTL/pQTL studies)

Usage

addloctocross(cross, locations=NULL, locfile="locations.txt", verbose=FALSE)

Arguments

cross
An object of class cross. See read.cross for details.
locations
R variable holding location information
locfile
load from a file, see the details section for the layout of the file.
verbose
If TRUE, give verbose output

Value

The input cross object, with the locations added as an aditional component locations

Details

inputfile layout: Num Name Chr cM 1 X3.Hydroxypropyl 4 50.0 Num is the number of the phenotype in the cross object Name is the name of the phenotype (will be checked against the name already in the cross object at position num Chr Chromosome cM postion from start of chromosome in cM

See Also

Examples

Run this code

## Not run: 
# 	data(multitrait)
# 	data(locations)
# 	multiloc <- addloctocross(multitrait,locations)
# 	results <- scanall(multiloc)
# 	mqmplot.cistrans(results, multiloc, 5, FALSE, TRUE)
#   ## End(Not run)

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