VGAM (version 0.8-1)

amlbinomial: Binomial Logistic Regression by Asymmetric Maximum Likelihood Estimation

Description

Binomial quantile regression estimated by maximizing an asymmetric likelihood function.

Usage

amlbinomial(w.aml = 1, parallel = FALSE, digw = 4, link = "logit", earg = list())

Arguments

w.aml

Numeric, a vector of positive constants controlling the percentiles. The larger the value the larger the fitted percentile value (the proportion of points below the ``w-regression plane''). The default value of unity results in the ordinary maximum

parallel

If w.aml has more than one value then this argument allows the quantile curves to differ by the same amount as a function of the covariates. Setting this to be TRUE should force the quantile curves to not cross (although

digw

Passed into Round as the digits argument for the w.aml values; used cosmetically for labelling.

link, earg

See binomialff.

Value

• An object of class "vglmff" (see vglmff-class). The object is used by modelling functions such as vglm and vgam.

Warning

If w.aml has more than one value then the value returned by deviance is the sum of all the (weighted) deviances taken over all the w.aml values. See Equation (1.6) of Efron (1992).

Details

The general methodology behind this VGAM family function is given in Efron (1992) and full details can be obtained there. This model is essentially a logistic regression model (see binomialff) but the usual deviance is replaced by an asymmetric squared error loss function; it is multiplied by $w.aml$ for positive residuals. The solution is the set of regression coefficients that minimize the sum of these deviance-type values over the data set, weighted by the weights argument (so that it can contain frequencies). Newton-Raphson estimation is used here.

References

Efron, B. (1992) Poisson overdispersion estimates based on the method of asymmetric maximum likelihood. Journal of the American Statistical Association, 87, 98--107.

See Also

amlpoisson, amlexponential, amlnormal, alaplace1, denorm.

Examples

# Example: binomial data with lots of trials per observation
set.seed(1234)
sizevec = rep(100, length=(nn <- 200))
mydat = data.frame(x = sort(runif(nn)))
mydat = transform(mydat, prob=logit(-0+2.5*x+x^2, inverse=TRUE))
mydat = transform(mydat, y = rbinom(nn, size=sizevec, prob=prob))
mydat = transform(mydat, y = y / sizevec)  # Convert to proportions
(fit = vgam(y ~ s(x, df=3), fam=amlbinomial(w=c(0.01,0.2,1,5,60)),
           data=mydat, weight=sizevec, trace=TRUE))
fit@extra

par(mfrow=c(1,2))
# Quantile plot
with(mydat, plot(x, jitter(y), col="blue", las=1, main=
     paste(paste(round(fit@extra$percentile, dig=1), collapse=", "),
           "percentile-expectile curves")))
with(mydat, matlines(x, fitted(fit), lwd=2, col="blue", lty=1))


# Compare the fitted expectiles with the quantiles
with(mydat, plot(x, jitter(y), col="blue", las=1, main=
     paste(paste(round(fit@extra$percentile, dig=1), collapse=", "),
           "percentile curves are red")))
with(mydat, matlines(x, fitted(fit), lwd=2, col="blue", lty=1))

for(ii in fit@extra$percentile)
    with(mydat, matlines(x, qbinom(p=ii/100, size=sizevec, prob=prob)/sizevec,
                  col="red", lwd=2, lty=1))