pcutils (version 0.2.7)

stackplot: Plot a stack plot

Description

Plot a stack plot

Plot a area plot

Usage

stackplot(
  otutab,
  metadata = NULL,
  group = "Group",
  get_data = FALSE,
  bar_params = list(width = 0.7, position = "stack"),
  topN = 8,
  others = TRUE,
  relative = TRUE,
  legend_title = "",
  stack_order = TRUE,
  group_order = FALSE,
  facet_order = FALSE,
  style = c("group", "sample")[1],
  flow = FALSE,
  flow_params = list(lode.guidance = "frontback", color = "darkgray"),
  number = FALSE,
  repel = FALSE,
  format_params = list(digits = 2),
  text_params = list(position = position_stack())
)
areaplot(
  otutab,
  metadata = NULL,
  group = "Group",
  get_data = FALSE,
  bar_params = list(position = "stack"),
  topN = 8,
  others = TRUE,
  relative = TRUE,
  legend_title = "",
  stack_order = TRUE,
  group_order = FALSE,
  facet_order = FALSE,
  style = c("group", "sample")[1],
  number = FALSE,
  format_params = list(digits = 2),
  text_params = list(position = position_stack())
)

Value

a ggplot

a ggplot

Arguments

otutab

otutab

metadata

metadata

group

one group name of columns of metadata

get_data

just get the formatted data?

bar_params

parameters parse to geom_bar

topN

plot how many top species

others

should plot others?

relative

transfer to relative or absolute

legend_title

fill legend_title

stack_order

the order of stack fill

group_order

the order of x group, can be T/F, or a vector of x, or a name, or "cluster"

facet_order

the order of the facet

style

"group" or "sample"

flow

should plot a flow plot?

flow_params

parameters parse to geom_flow

number

show the number?

repel

use the ggrepel::geom_text_repel instead of geom_text

format_params

parameters parse to format

text_params

parameters parse to geom_text

Examples

data(otutab)
stackplot(otutab, metadata, group = "Group")
# \donttest{
if (interactive()) {
  stackplot(otutab, metadata,
    group = "Group", style = "sample",
    group_order = TRUE, flow = TRUE, relative = FALSE
  )
}
# }
data(otutab)
areaplot(otutab, metadata, group = "Id")
# \donttest{
areaplot(otutab, metadata,
  group = "Group", style = "sample",
  group_order = TRUE, relative = FALSE
)
# }