Usage
## S3 method for class 'genind':
initialize(.Object, tab, pop = NULL, prevcall = NULL,
ploidy = 2L, type = c("codom", "PA"), strata = NULL, hierarchy = NULL,
...)genind(...)
as.genind(...)
Arguments
.Object
prototyped object (generated automatically when calling 'new')
tab
A matrix of integers corresponding to the @tab slot of a genind
object, with individuals in rows and alleles in columns, and containing
either allele counts (if type="codom") or allele presence/absence (if
type="PA")
pop
an optional factor with one value per row in tab indicating
the population of each individual
prevcall
an optional call to be stored in the object
ploidy
an integer vector indicating the ploidy of the individual; each
individual can have a different value; if only one value is provided, it is
recycled to generate a vector of the right length.
type
a character string indicating the type of marker: codominant
("codom") or presence/absence ("PA")
strata
a data frame containing population hierarchies or
stratifications in columns. This must be the same length as the number of
individuals in the data set.
hierarchy
a hierarchical formula defining the columns of the strata
slot that are hierarchical. Defaults to NULL.
...
further arguments passed to other methods (currently not used)