cati (version 0.99.3)

as.listofindex: Transform index results in a list of index

Description

Transform various results from functions Tstast, ComIndex or ComIndexMulti in a list of index. Useful to use the functions plot.listofindex (S3 method) and ses.listofindex.

Usage

as.listofindex(x, namesindex = NULL)

Arguments

x

A list of objects of class Tstast, ComIndex or ComIndexMulti

namesindex

Optionnal, the names of index in the same order as in x.

Value

A list of observed values and corresponding "null" values (i.e. produced by null models) in the form "list(index1, null model index1, index2, null model index2 ...)"

See Also

ses.listofindex; plot.listofindex

Examples

# NOT RUN {
	data(finch.ind)

	res.finch <- Tstats(traits.finch, ind.plot = ind.plot.finch, 
	sp = sp.finch, nperm = 9, print = FALSE)

	
# }
# NOT RUN {
		#### Use a different regional pool than the binding of studied communities
		#create a random regional pool for the example
	
		reg.p <- rbind(traits.finch, traits.finch[sample(1:2000,300), ])
	
		res.finch2 <- Tstats(traits.finch, ind.plot = ind.plot.finch, 
	    sp = sp.finch, reg.pool=reg.p, nperm = 9, print = FALSE)	
	    
	    plot(as.listofindex(list(res.finch,res.finch2)))
    
    
	    #### Use a different regional pool for each communities
		#create a random regional pool for each communities for the example
		list.reg.p <- list(
		traits.finch[sample(1:290,200), ], traits.finch[sample(100:1200,300), ], 
		traits.finch[sample(100:1500, 1000), ], traits.finch[sample(300:800,300), ],
		traits.finch[sample(1000:2000, 500), ], traits.finch[sample(100:900, 700), ] )

		# Warning: the regional pool need to be larger than the observed communities
		table(ind.plot.finch)
		# For exemple, the third community need a regional pool of more than 981 individuals
		
		res.finch3 <- Tstats(traits.finch, ind.plot = ind.plot.finch, 
	    sp = sp.finch, reg.pool=list.reg.p, nperm = 9, print = FALSE)	
	    
	    plot(as.listofindex(list(res.finch, res.finch2, res.finch3)))	
	
# }
# NOT RUN {

# }