affy (version 1.50.0)

assessAll: Assessment functions

Description

Assessment functions. Takes a couple of ExpressionSet, one for spike in another for the dilution and returns a list with necessary information to create assessment plots.

Usage

assessAll(d,s,method.name=NULL,verbose=TRUE)
affycomp(d,s,method.name=NULL,verbose=TRUE,return.it=TRUE)

Arguments

d

An ExpressionSet containing the expression measures for the Gene Logic's dilution experiment.

s

An ExpressionSet containing expression measures for the Affymetrix's spike-in experiment.

method.name

Name of expression measure being assessed.

verbose

verbosity flag.

return.it

if TRUE returns assessment lists.

Value

• Lists with the necessary information to make the Figures.

Details

assessAll performs assessments for Figures 1-6. It is a wrapper for assessDilution and assessSpikeIn.

affycomp is a wrapper that does it all... including the plotting and creation of table.