Rdocumentation
powered by
Learn R Programming
MareyMap (version 1.3.10)
Estimation of Meiotic Recombination Rates Using Marey Maps
Description
Local recombination rates are graphically estimated across a genome using Marey maps.
Copy Link
Link to current version
Version
Version
1.3.10
1.3.7
1.3.6
1.3.5
1.3.4
1.3.3
1.3.1
1.3.0
1.2
Install
install.packages('MareyMap')
Monthly Downloads
238
Version
1.3.10
License
GPL (>= 2)
Maintainer
Aurélie Siberchicot
Last Published
April 7th, 2025
Functions in MareyMap (1.3.10)
Search all functions
color-methods
Accessors for slot color in package 'MareyMap'
geneticDistances-methods
Accessors for slot geneticDistances
MapSet-class
Class "MapSet"
argList-methods
Methods for function argList in package 'MareyMap'
createOrder-methods
createOrder
MapCollection-methods
Constructor for class MapCollection
MapCollection-class
Class "MapCollection"
MapSet-methods
Constructor for the class MapSet.
mapName-methods
accessors for the slot mapName
interpolation-methods
set or returns an interpolation.
interpolations-methods
accessors for slot interpolations
paramValues-methods
Accessor for the slot paramValues.
persistent-methods
Accessors for the slot persistent.
paramDesc-methods
Accessors for the slot paramDesc
plotRates-methods
plotRates
getInterList-methods
returns a list of interpolation methods.
interpolate-methods
interpolate
plotRate-methods
plotRate
removeMarker-methods
removeMarker
MareyMap-methods
Constructor for object of the class MareyMap.
MareyMap-class
Class "MareyMap"
name-methods
Accessor for slot name.
paramName-methods
Accessors for the slot paramName.
registerInterpolationMethod-methods
registerInterpolationMethods
paramFun-methods
accessors for the slot paramFun
query-methods
Methods for Function query
markerNames-methods
Accessors for the class markerNames.
paramDefault-methods
Accessors for slot paramDefault
mapNames-methods
mapNames
physicalPositions-methods
Accessors for the slot physicalPositions
startMareyMapGUI-methods
MareyMapGUI launcher
plotMarkers-methods
plotMarkers
plotModel-methods
plotModel
plotModels-methods
plotModels
rates-methods
Accessors for the slot rates
markerValidity-methods
accessors for slot markerValidity
visible-methods
Accessors for the slot visible
paramType-methods
Accessors for the slot paramType.
paramMax-methods
Accessors for the slot paramMax.
setName-methods
Accessors for the slot setName.
setNames-methods
setNames
validPositions-methods
validPositions
userParam-methods
userParam
textFile-methods
textFile
paramMin-methods
Accessors for slot paramMin.
InterpolationParam-class
Class "InterpolationParam"
InterpolationParam-methods
Methods for Function InterpolationParam in Package 'MareyMap'
Arabidopsis_thaliana
The marey map for the species Arabidopsis thaliana
Interpolation-class
Class "Interpolation"
MMLoess-class
Class "MMLoess". Interpolation method plug-in for MareyMap
Caenorhabditis_elegans
The marey map for the species Caenorhabditis_elegans
Drosophila_melanogaster
The marey map for the species Drosophila melanogaster
MMSlidingWindow-class
Class "MMSlidingWindow" Interpolation method plug-in for MareyMap
MMSpline3-class
Class "MMSpline3" Interpolation using cubic splines
Homo_sapiens
The marey map for the species Homo sapiens (female, male and mean of the two)