RDAVIDWebService (version 1.10.0)

categories: categories for the different DAVIDWebService package class objects

Description

Obtain ids related information, according to the given function call (see Values).

Usage

categories(object)
  "categories"(object)
  "categories"(object)

Arguments

object

DAVIDWebService class object. Possible values are: DAVIDFunctionalAnnotationChart or DAVIDFunctionalAnnotationTable.

Value

according to the call, one of the following objects can be returned:

DAVIDFunctionalAnnotationChart

factor vector of the "Category" column.

DAVIDFunctionalAnnotationTable

character vector with the name of available main categories in the dictionary/membership.

See Also

Other DAVIDFunctionalAnnotationChart: DAVIDFunctionalAnnotationChart, DAVIDFunctionalAnnotationChart, DAVIDFunctionalAnnotationChart, DAVIDFunctionalAnnotationChart-class, DAVIDFunctionalAnnotationTable, DAVIDFunctionalAnnotationTable, DAVIDFunctionalAnnotationTable, DAVIDGODag, DAVIDGODag, DAVIDGeneCluster, DAVIDGeneCluster, DAVIDGenes, DAVIDGenes, DAVIDGenes, DAVIDTermCluster, DAVIDTermCluster, as, as, as, ids, ids, ids, ids, ids, initialize, initialize, initialize, initialize, initialize, initialize, initialize, plot2D, plot2D, plot2D, plot2D, plot2D, plot2D

Other DAVIDFunctionalAnnotationTable: DAVIDFunctionalAnnotationChart, DAVIDFunctionalAnnotationChart, DAVIDFunctionalAnnotationChart, DAVIDFunctionalAnnotationTable, DAVIDFunctionalAnnotationTable, DAVIDFunctionalAnnotationTable, DAVIDFunctionalAnnotationTable-class, DAVIDGODag, DAVIDGODag, DAVIDGeneCluster, DAVIDGeneCluster, DAVIDGenes, DAVIDGenes, DAVIDGenes, DAVIDTermCluster, DAVIDTermCluster, as, as, as, dictionary, dictionary, genes, genes, genes, genes, initialize, initialize, initialize, initialize, initialize, initialize, initialize, membership, membership, plot2D, plot2D, plot2D, plot2D, plot2D, plot2D, subset, subset

Examples

{
##DAVIDFunctionalAnnotationChart example
##Load the Functional Annotation Chart file report for the input demo
##file 2, using data function. Then, create a DAVIDFunctionalAnnotationChart
##object using the loaded data.frame funChart2.
data(funChart2)
davidFunChart2<-DAVIDFunctionalAnnotationChart(funChart2)

##In Addition to the usual data.frame accessors, the user can inspect the
##main categories used in the analysis.
categories(davidFunChart2)

##DAVIDFunctionalAnnotationTable example
##Load the Functional Annotation Table file report for the input demo
##file 1, using data function. Then, create a DAVIDFunctionalAnnotationTable
##object using the loaded data.frame annotationTable1.
data(annotationTable1)
davidFunTable1<-DAVIDFunctionalAnnotationTable(annotationTable1)

##Now, the user can inspect the main categories used in the analysis.
categories(davidFunTable1)
}