gQTLBase (version 1.4.2)

ciseStore-class: Class "ciseStore"

Description

wrap a BatchJobs registry that manages results of a cis-eQTL search

Objects from the Class

Objects can be created by calls of the form new("ciseStore", reg=reg, ...). All arguments must be named.

We can also use ciseStore(reg, validJobs, addProbeMap = TRUE, addRangeMap = TRUE) and the probemap and rangeMap slots will be populated appropriately. If validJobs is missing, the validJobs slot will be populated by findDone(reg). This may be problematic for handcrafted extracts from archives.

Methods

show

Function describeStore uses batchMapResults and reduceResults to leverage a parallel environment to collect information on numbers of tests and features. Arguments are described in the associated man page.

Examples

showClass("ciseStore")
# get the global assignment back
require(BatchJobs)
if (require(geuvStore2)) {
 store = makeGeuvStore2()
 store
 }