topGO (version 2.24.0)

classicCount-class: Class "classicCount"

Description

This class that extends the virtual class "groupStats" by adding a slot representing the significant members.

Objects from the Class

Objects can be created by calls of the form new("classicCount", testStatistic = "function", name = "character", allMembers = "character", groupMembers = "character", sigMembers = "character").

Slots

significant:

Object of class "integer" ~~

name:

Object of class "character" ~~

allMembers:

Object of class "character" ~~

members:

Object of class "character" ~~

testStatistic:

Object of class "function" ~~

Extends

Class "groupStats", directly.

Methods

contTable

signature(object = "classicCount"): ...

initialize

signature(.Object = "classicCount"): ...

numSigAll

signature(object = "classicCount"): ...

numSigMembers

signature(object = "classicCount"): ...

sigAllMembers

signature(object = "classicCount"): ...

sigMembers<-

signature(object = "classicCount"): ...

sigMembers

signature(object = "classicCount"): ...

Details

This class is used for test statistic based on counts, like Fisher's exact test

See Also

classicScore-class, groupStats-class, getSigGroups-methods

Examples

##---- Should be DIRECTLY executable !! ----