commOccu-class

Management of and data extraction from camera trap data in wildlife studies. The package provides a workflow for storing and sorting camera trap photos (and videos), tabulates records of species and individuals, and creates detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it can visualise species activity data and provides simple mapping functions with GIS export.

Juergen Niedballa

camtrapR

Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses

Alexandre Courtiol

Rahel Sollmann

John Mathai

Seth Timothy Wong

An The Truong Nguyen

Azlan bin Mohamed

Andrew Tilker

Roshan Guharajan

Ioannis Alexiou

Andreas Wilting

commOccu-class function

<dl class="dl-horizontal">
<dt><code>modelText</code></dt><dd>JAGS model code as a character vector (made up of code chunks, use cat() to print)</dd></dl><dt><code>params</code></dt><dd>Parameters to monitor in the model runs</dd><dt><code>inits_fun</code></dt><dd>Function to create start values for the MCMC chains. It being a function ensures different values in each chain</dd><dt><code>data</code></dt><dd>List with data needed to run the model (detection &amp; effort matrices, site covariates, number of species / stations / occasions)</dd><dt><code>input</code></dt><dd>Input data_list (unchanged)</dd><dt><code>nimble</code></dt><dd>logical indicator for whether it is a Nimble model</dd><dt><code>modelFile</code></dt><dd>Path of the text file containing the model code</dd><dt><code>covariate_info</code></dt><dd>Data frame containing information about covariates. Only used internally in plot_* and predict methods</dd>

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commOccu objects — commOccu-class

commOccu objects

commOccu-class: commOccu objects

Description

Arguments

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