regioneR (version 1.4.0)

commonRegions: Common Regions

Description

Returns the regions that are common in two region sets, its intersection.

Usage

commonRegions(A, B)

Arguments

A

a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)

B

a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)

Value

It returns a GenomicRanges object with the regions present in both region sets.

See Also

plotRegions, toDataframe, toGRanges, subtractRegions, splitRegions, extendRegions, joinRegions, mergeRegions, overlapRegions

Examples

A <- data.frame("chr1", c(1, 10, 20, 30), c(12, 13, 28, 40))

B <- data.frame("chr1", 25, 35)

commons <- commonRegions(A, B)

plotRegions(list(A, B, commons), chromosome="chr1", regions.labels=c("A", "B", "common"), regions.colors=3:1)