minfi (version 1.18.4)

controlStripPlot: Plot control probe signals.

Description

Strip plots are produced for each control probe type specified.

Usage

controlStripPlot(rgSet, controls = c("BISULFITE CONVERSION I", "BISULFITE CONVERSION II"), sampNames = NULL, xlim = c(5, 17))

Arguments

rgSet

An RGChannelSet.

controls

A vector of control probe types to plot.

sampNames

Sample names to be used for labels.

xlim

x-axis limits.

Value

No return value. Plots are produced as a side-effect.

Details

This function produces the control probe signal plot component of the QC report.

See Also

qcReport, mdsPlot, densityPlot, densityBeanPlot

Examples

if (require(minfiData)) {

names <- pData(RGsetEx)$Sample_Name
controlStripPlot(RGsetEx, controls=c("BISULFITE CONVERSION I"), sampNames=names)

}