design

design,DESeqDataSet-method

design<-,DESeqDataSet,formula-method

object

a <code>formula</code> used for estimating dispersion
and fitting Negative Binomial GLMs

value


The design holds the R <code>formula</code> which expresses how the
counts depend on the variables in <code>colData</code>.
See <code><a rd-options="" href="/link/DESeqDataSet?package=DESeq2&version=1.12.3" data-mini-rdoc="DESeq2::DESeqDataSet">DESeqDataSet</a></code> for details.


Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial
distribution.

Michael Love

DESeq2

Differential gene expression analysis based on the negative
binomial distribution

design function

The design holds the R <code>formula</code> which expresses how the
counts depend on the variables in <code>colData</code>.
See <code><a href="DESeqDataSet" rd-options="">DESeqDataSet</a></code> for details.

design: Accessors for the 'design' slot of a DESeqDataSet object.

Description

Usage

Arguments

Examples