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lme4 (version 1.1-17)

Linear Mixed-Effects Models using 'Eigen' and S4

Description

Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".

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Install

install.packages('lme4')

Monthly Downloads

539,960

Version

1.1-17

License

GPL (>= 2)

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Repository

https://github.com/lme4/lme4/ http://lme4.r-forge.r-project.org/

Maintainer

Ben Bolker

Last Published

April 3rd, 2018

Functions in lme4 (1.1-17)

Univariate Gauss-Hermite quadrature rule

Dummy variables (experimental)

add information to data based on a fitted model

Extract or Get Generalized Components from a Fitted Mixed Effects Model

Fit List of lm or glm Objects with a Common Model

Predictions from a model at new data values

Mixed-Effects Profile Plots (Regular / Density / Pairs)

Yield of dyestuff by batch

Arabidopsis clipping/fertilization data

Verbal Aggression item responses

Class "merPredD" - a Dense Predictor Reference Class

Generator object for the '>merPredD class

Class "lmList4" of 'lm' Objects on Common Model

profile-methods

Profile method for merMod objects

Getting p-values for fitted models

Model-based (Semi-)Parametric Bootstrap for Mixed Models

NelderMead-class

Class "NelderMead" of Nelder-Mead optimizers and its Generator

University Lecture/Instructor Evaluations by Students at ETH

troubleshooting

Troubleshooting

Fitting Generalized Linear Mixed-Effects Models

Fitting Negative Binomial GLMMs

Print and Summary Method Utilities for Mixed Effects

Extended Convergence Checking

Data on red grouse ticks from Elston et al. 2001

Nelder-Mead Optimization of Parameters, Possibly (Box) Constrained

Compute Confidence Intervals for Parameters of a [ng]lmer Fit

Variation in penicillin testing

Determine random-effects expressions from a formula

Is f1 nested within f2?

Extract fixed-effects estimates

Check characteristics of models

Control of Mixed Model Fitting

Paste strength by batch and cask

Breakage Angle of Chocolate Cakes

Assessing Convergence for Fitted Models

Extract the deviance component list

Extract Variance and Correlation Components

Class "merMod" of Fitted Mixed-Effect Models

hatvalues.merMod

Diagonal elements of the hat matrix

Contagious bovine pleuropneumonia

Omit terms separated by vertical bars in a formula

glmFamily-class

Class "glmFamily" - a reference class for family

Linear, generalized linear, and nonlinear mixed models

Diagnostic Plots for 'merMod' Fits

Fit Linear Mixed-Effects Models

Generator object for the '>glmFamily class

mkSimulateTemplate

Make templates suitable for guiding mixed model simulations

Create an lmerResp, glmResp or nlsResp instance

Generator objects for the response classes

Reference Classes for Response Modules, "(lm|glm|nls|lmer)Resp"

Attempt to convert grouping variables to factors

expandDoubleVerts

Expand terms with '||' notation into separate '|' terms

Number of Levels of a Factor or a "merMod" Model

Fitting Nonlinear Mixed-Effects Models

Manipulate a Nonlinear Model Formula

Refit a Model by Maximum Likelihood Criterion

residuals.merMod

residuals of merMod objects

Wrappers for additional optimizers

glmerLaplaceHandle

Handle for glmerLaplace

Convert between representations of (co-)variance structures

Class "golden" and Generator for Golden Search Optimizer Class

Generator object for the rePos (random-effects positions) class

Extract the modes of the random effects

Create a 'merMod' Object

Class "rePos"

Make Random Effect Terms: Create Z, Lambda, Lind, etc.

Make Variance and Correlation Matrices from theta

Modular Functions for Mixed Model Fits

Extract Residual Standard Deviation 'Sigma'

Refit a (merMod) Model with a Different Response

simulate.merMod

Simulate Responses From '>merMod Object

Reaction times in a sleep deprivation study

"Sub[stitute] Bars"

Sparse Gaussian / Gauss-Hermite Quadrature grid

Drop all possible single fixed-effect terms from a mixed effect model