discontPlot


The CAFE datalist to be analyzed, i.e. the output of
<code><a rd-options="" href="/link/ProcessCels?package=CAFE&version=1.8.0" data-mini-rdoc="CAFE::ProcessCels">ProcessCels</a></code>.


datalist


A vector or sample numbers to be plotted


samples

chromNum


The <code>gamma</code> level can be roughly compared to the sliding window size
in a normal continuous smoother. 
The <code>gamma</code> level determines how strict the algorithm functions; a
higher level will correspond to fewer jumps. This can not be higher than
the total number of probesets on the to-be-analyzed chromosome. Must be a
positive integer. 


gamma


if <code>TRUE</code>, will overlay a chromosome idiogram over the chromosome plot


idiogram


Specify a file name to store output png file


file

<p></p><p>Plots chromosome plots with a discontinuous smoother
</p>

hplot

dplot

Detection and visualizations of gross chromosomal
aberrations using Affymetrix expression microarrays as input

Sander Bollen

CAFE

Chromosmal Aberrations Finder in Expression data

discontPlot function

The CAFE datalist to be analyzed, i.e. the output of
<code><a href="ProcessCels" rd-options="">ProcessCels</a></code>.

The <code>gamma</code> level can be roughly compared to the sliding window size
in a normal continuous smoother. 
The <code>gamma</code> level determines how strict the algorithm functions; a
higher level will correspond to fewer jumps. This can not be higher than
the total number of probesets on the to-be-analyzed chromosome. Must be a
positive integer.

if <code>TRUE</code>, will overlay a chromosome idiogram over the chromosome plot

Specify a file name to store output png file

Plots chromosome plots with a discontinuous smoother

discontPlot:
Plot with discontinuous smoother

Description

Usage

Arguments

Value

References

See Also

Examples