These methods can be used to perform aromaticity detection, atom
typing or isotopic configuration on a molecule object. In general, when molecules are
loaded via load.molecules these are performed by
default. If molecules are obtained via parse.smiles
these operations are not performed and so the user should call one or
both of these methods to corrrectly configure a molecule.
do.aromaticity(molecule)
do.typing(molecule)
do.isotopes(molecule)The molecule on which the operation is to be
performed. Should of class jobjRef with a jclass
attribute of IAtomContainer
No return value. If the operations fail an exception is thrown and an error message is printed