exons


This particular data set is a small subset of the entire exon data set used in our study. The exons are obtained from the NCBI human RefSeq RNA Sequences. Overlapping exons are combined to form non-overlapping exons. The read positions are related to the reads database.

 datasets

Some functions for modeling sequence read counts as a
generalized poisson model and to use this model for detecting
differentially expressed genes in different conditions and
differentially spliced exons.

Sudeep Srivastava

GPseq

gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments

exons function

The exons data is a (num_exons x 4) matrix where num_exons is the total number of uniquely annotated exons. Column 1 is the exon ID, column 2 is the start position and column 3 is the end position of the reads mapping to an exon corresponding to the reads dataset. That is if column 2 =4 and column 3 = 15, reads 4 to 15 map to this particular exon. Column 4 is the length of the exon. num_exons = 8

exons: Exon Annotation Database

Description

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References

See Also