Usage
expandedProfile(genelist, idType = "Entrez", onto = "ANY", level = 2,orgPackage=NULL, anotPackage=NULL,
multilevels = NULL, ord = TRUE, na.rm = TRUE, percentage = TRUE)
Arguments
genelist
List of genes on which the Profile has to be based
idType
Type of identifiers for the genes. Use 'Entrez' preferably
onto
Ontology on which the profile has to be built
level
Level of the ontology at which the profile has to be
built
orgPackage
Name of a Bioconductor's organism annotations package
('org.Xx-eg-db'). This field must be provided if the gene list passed
to the function is either a character vector of 'Entrez' (NCBI) identifiers or a character vector of probe names
anotPackage
Name of Bioconductor annotations package. This field must be provided if the gene list passed to the function is a character vector of probe names
ord
Set to 'TRUE' if the profile has to appear ordered by the category names
multilevels
If it is not NULL it must be a vector of GO categories that defines the level at where the profile is built
na.rm
Set to 'TRUE' if NAs should be removed
percentage
Set to 'TRUE' if the profile must be built using percentages