Usage
check_qtl(QTL, map, n.founders)
check_ped(pedigree)
combine_chr(map, map.function)
combine_ibd(obsgeno)
combine_rf(mpcross1, mpcross2, r)
compute_bnrf(mpcross1, mpcross2, r, grid)
convertped(pedigree)
CR_cross(mpcross)
CR_gen_geno(map, map.function, ped, seed, transpos, transval)
CR_estrf(finals, founders, pedigree, pairs, r)
CR_calcLD(finals, founders, pedigree, pairs, rmat)
cleanrf(mpcross)
fill(mat, missfx=2, ...)
generate_error(geno, error.prob)
generate_obs(geno, map, full.prob, fg, transpos, transval, founderld)
generate_pheno(n.founders, qtlgeno, qtleffects, vare, n.ind)
getpval(model)
reorgRIgenoprob <- function(cross)
scan3pt <- function(mpcross, chr, step=0, mapfx=c("haldane", "kosambi"))
wald.test.asreml(object, cc)
cintern(cc, tau, vrb, sigma2)