mpMap (version 1.14)

fit: Fit a full model including all QTL and effects from base model

Description

Given the output from a scan of chromosomes with significant genetic variation, fits a full mixed model containing all effects in base model and all QTL effects.

Usage

fit (object, ...) 
"fit" (object, ...)

Arguments

object

Object of class mpqtl

...

Additional arguments to be used in asreml

Value

An asreml model and summary table of QTL effects, p-values and Wald statistics from fitting the full model.

See Also

mpIM, summary.mpqtl

Examples

sim.map <- sim.map(len=rep(100, 2), n.mar=11, include.x=FALSE, eq.spacing=TRUE)
sim.ped <- sim.mpped(4, 1, 500, 6, 1)
sim.dat <- sim.mpcross(map=sim.map, pedigree=sim.ped, qtl=matrix(data=c(1, 10, .4, 0, 0, 0, 1, 70, 0, .35, 0, 0), nrow=2, ncol=6, byrow=TRUE), seed=1)
mpp.dat <- mpprob(sim.dat, program="qtl", step=2)
mpq.dat <- mpIM(object=mpp.dat, ncov=0, responsename="pheno")
fit(mpq.dat)