Objects from the Class
The object unites the flowMerge model output and the data being modeled and contains additional slots for various characteristics of a merged cluster solution, including the entropy of clustering.Slots
merged:- The number of observations merged at the current step in the algorithm.
mtree:- A tree--structured graph representing the order of merged components in the model. Inspired by SPADE. (Bendall et al.)
entropy:- The entropy of clustering of the current solution.
DATA:- An environment whose first element contains the flowFrame with the data modeled by this flowMerge object
expName:- See the
flowClust package for details varNames:- See the
flowClust package for details K:- The number of clusters in the merged solution. See the
flowClust package for details w:- The proportions for each component in the merged solution. See the
flowClust package for details mu:- The means of the components in the merged solution. See the
flowClust package for details sigma:- The covraiances of the components in the merged solution. See the
flowClust package for details lambda:- See the
flowClust package for details nu:- See the
flowClust package for details z:- See the
flowClust package for details u:- The uncertainties for each data point.
label:- See the
flowClust package for details uncertainty:- See the
flowClust package for details ruleOutliers:- See the
flowClust package for details flagOutliers:- See the
flowClust package for details rm.min:- See the
flowClust package for details rm.max:- See the
flowClust package for details logLike:- See the
flowClust package for details BIC:- See the
flowClust package for details ICL:- See the
flowClust package for details
Extends
Class "flowObj", directly.
Class "flowClust", by class "flowObj", distance 2.Methods
- getData
signature(obj = "flowMerge"): Retrieves the flowFrame in the DATA environment slot. - plot
signature(x = "flowMerge", y = "missing"): Plots the clusters in this object. - summary
signature(x="flowMerge"): Prints a summary of the object.- show
signature(x="flowMerge"): Prints information about the object.