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This function calls fslmaths -bin. The R functions wraps fslmaths
fslmaths -bin
fslmaths
fsl_bin(..., outfile = tempfile(fileext = ".nii.gz"), retimg = FALSE)fslbin(file, outfile = NULL, retimg = TRUE, reorient = FALSE, intern = FALSE, opts = "", ...)
fslbin(file, outfile = NULL, retimg = TRUE, reorient = FALSE, intern = FALSE, opts = "", ...)
additional arguments passed to readnii.
readnii
(character) resultant image name (optional)
(logical) return image of class nifti
(character) image to be binarized
(logical) If retimg, should file be reoriented when read in? Passed to readnii.
(logical) to be passed to system
system
(character) operations to be passed to fslmaths
If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.
retimg
# NOT RUN { set.seed(5) dims = rep(10, 3) arr = array(rnorm(prod(dims)), dim = dims) nim = oro.nifti::nifti(arr) if (have.fsl()){ fslbin(nim) fsl_bin(nim) } # }
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