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Rarefy (version 1.1.1)

Rarefaction Methods

Description

Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) ; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W., … Chiarucci, A. (2016) ; Bacaro, G., Rocchini, D., Ghisla, A., Marcantonio, M., Neteler, M., & Chiarucci, A. (2012) ).

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Version

Install

install.packages('Rarefy')

Monthly Downloads

29

Version

1.1.1

License

GPL (>= 2)

Maintainer

Elisa Thouverai

Last Published

July 6th, 2023

Functions in Rarefy (1.1.1)

rare_beta

Beta Diversity Rarefaction Curve
rare_phylo

Phylogenetic Diversity Rarefaction Curves
rarexpected_fun

Functional Diversity Rarefaction Curves
directionalSAC

Spatial Explicit Rarefaction Curves
duneFVG.tr8

Functional Traits of Vascular Plants Data in Northern Adriatic Dunes
duneFVG

Abundance of Vascular Plants Data in Northen Adriatic Dunes
rao_permuted

Functional Rarefaction Curves on Standardized Species Number
rare_alpha

Alpha Diversity Rarefaction Curve
duneFVG.xy

Geographical Coordinates of Plots, in Northen Adriatic Dunes
ser_functional

Functional Spatially-Explicit Rarefaction Curves