methylKit (version 0.99.2)

getAssembly: get assembly of the genome

Description

The function returns the genome assembly stored in any of the methylBase,methylBaseDB,methylRaw, methylRawDB,methylDiff objects

Usage

getAssembly(x)
# S4 method for methylBase
getAssembly(x)
# S4 method for methylRaw
getAssembly(x)
# S4 method for methylDiff
getAssembly(x)
# S4 method for methylRawDB
getAssembly(x)
# S4 method for methylBaseDB
getAssembly(x)
# S4 method for methylDiffDB
getAssembly(x)

Arguments

x

an methylBase,methylBaseDB, methylRaw,methylRawDB or methylDiff object

Value

the assembly string for the object

Examples

# NOT RUN {
data(methylKit)

getAssembly(methylBase.obj)
getAssembly(methylDiff.obj)
getAssembly(methylRawList.obj[[1]])


# }