methylKit (version 0.99.2)

getContext: get the context of methylation

Description

The function returns the context of methylation. For example: "CpG","CHH" or "CHG"

Usage

getContext(x)
# S4 method for methylBase
getContext(x)
# S4 method for methylRaw
getContext(x)
# S4 method for methylDiff
getContext(x)
# S4 method for methylRawDB
getContext(x)
# S4 method for methylBaseDB
getContext(x)
# S4 method for methylDiffDB
getContext(x)

Arguments

x

an methylBase,methylBaseDB, methylRaw,methylRawDB or an methylDiff object

Value

a string for the context methylation

Examples

# NOT RUN {
data(methylKit)

getContext(methylBase.obj)
getContext(methylDiff.obj)
getContext(methylRawList.obj[[1]])

# }