methylKit (version 0.99.2)

getData: get the data slot from the methylKit objects

Description

The functions retrieves the table containing methylation information from methylKit Objects. The data retrived from this function is of a data.frame. This is basically containing all relevant methylation information per genomic region or base.

Usage

getData(x)
# S4 method for methylBase
getData(x)
# S4 method for methylRaw
getData(x)
# S4 method for methylDiff
getData(x)
# S4 method for methylRawDB
getData(x)
# S4 method for methylBaseDB
getData(x)
# S4 method for methylDiffDB
getData(x)

Arguments

x

an methylBase,methylBaseDB, methylRaw,methylRawDB or methylDiff object

Value

data frame for methylation events

Examples

# NOT RUN {
data(methylKit)

# following commands show first lines of returned 
# data.frames from getData() function
head(
getData(methylBase.obj)
)

head( getData(methylDiff.obj))

head(getData(methylRawList.obj[[1]]))


# }