getTerms


Output returned by any of the <a rd-options="FGNet:fea_david" href="/link/fea%20functions?package=FGNet&version=3.6.2&to=FGNet%3Afea_david" data-mini-rdoc="FGNet:fea_david::fea functions">fea functions</a>.


feaResults


"description" Returns term description, "GO" or "KEGG" returns GO or KEGG term IDs.


returnValue


Gets the terms in each metagroup/cluster (simplifyes the raw output from GeneTermLinker or DAVID).


Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.

Sara Aibar

FGNet

Functional Gene Networks derived from biological enrichment analyses

getTerms function

Output returned by any of the <a href="fea functions" rd-options="FGNet:fea_david">fea functions</a>.

"description" Returns term description, "GO" or "KEGG" returns GO or KEGG term IDs.

Gets the terms in each metagroup/cluster (simplifyes the raw output from GeneTermLinker or DAVID).

Get terms in the metagroups/clusters.

Each matrix contais the terms in each metagroup. This matrix contains only the term description. To get the term ID, annotation type, number of genes, or any other information, see the raw results returned by getResults.

getTerms: Get terms in the metagroups/clusters.

Description

Usage

Arguments

Value

See Also

Examples