getXcmsRaw

getXcmsRaw,xcmsSet-method

object


    The index of the sample for which the raw data should be
    returned. Can be a single number or a numeric vector with the
    indices. Alternatively, the file name can be specified.
  

sampleidx

profmethod

profstep


    Whether corrected or raw retention times should be returned.
  


    Additional arguments submitted to the <code><a rd-options="" href="/link/xcmsRaw?package=xcms&version=1.48.0" data-mini-rdoc="xcms::xcmsRaw">xcmsRaw</a></code> function.
  


  Reads the raw data applies evential retention time corrections and
  waters Lock mass correction and
  returns it as an <code>xcmsRaw</code> object (or list of <code>xcmsRaw</code>
  objects) for one or more files of the <code>xcmsSet</code> object.


methods

file

getXcmsRaw-methods

Framework for processing and visualization of
chromatographically separated and single-spectra mass spectral data. Imports from
AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for
high-throughput, untargeted analyte profiling.

Steffen Neumann

xcms

LC/MS and GC/MS Data Analysis

getXcmsRaw-methods function

<dl>
<dt>object = "xcmsSet"</dt><dd>
  <code>getXcmsRaw(object, sampleidx=1,
    profmethod=profinfo(object)$method, profstep=profinfo(object)$step,
    rt=c("corrected", "raw"), ...
  )</code>
</dd> </dl>

Methods


    Additional arguments submitted to the <code><a rd-options='' href='xcmsRaw'>xcmsRaw</a></code> function.
  

getXcmsRaw-methods: Load the raw data for one or more files in the xcmsSet

Description

Arguments

Value

Methods

See Also