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clampSeg (version 1.1-1)

Idealisation of Patch Clamp Recordings

Description

Implements the model-free multiscale idealisation approaches: Jump-Segmentation by MUltiResolution Filter (JSMURF) , JUmp Local dEconvolution Segmentation filter (JULES) and Heterogeneous Idealization by Local testing and DEconvolution (HILDE) . Further details on how to use them are given in the accompanying vignette.

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Version

Install

install.packages('clampSeg')

Monthly Downloads

125

Version

1.1-1

License

GPL-3

Maintainer

Pein Florian

Last Published

January 27th, 2022

Functions in clampSeg (1.1-1)

clampSeg-package

Idealisation of Patch Clamp Recordings
createLocalList

Precomputes quantities for hilde and improveSmallScales
gramA

Patch clamp recording of gramicidin A
improveSmallScales

Improves small scales
getCritVal

Critical values
jules

JULES
deconvolveLocally

Local deconvolution
stepDetection

Detection of steps / jumps by a multiresolution criterion
hilde

HILDE
lowpassFilter

Lowpass filtering
jsmurf

JSMURF