gPar

This data object is used by some plotting methods and contains the default 
values. User can change graphical parameters by changing this objectThe object consists of several layers refering to different plots and different
properties. Here an indicative descriptiongPar$genome: prameters here refer to the plot produced by plotGenomegraphical parameters: see ?par$colors: specify colors
$cex: specify relative size - points, text...
$lwd: specify line width
$lty: specify line type - solid, dashed
$mar: specify margins

datasets

 object

Performs ratio, GC content correction and normalization of
data obtained using low coverage (one read every 100-10,000 bp)
high troughput sequencing. It performs a "discrete"
normalization looking for the ploidy of the genome. It will
also provide tumour content if at least two ploidy states can
be found.

Stefano Berri

CNAnorm

A normalization method for Copy Number Aberration in cancer
samples

gPar function

Format

This data object is used by some plotting methods and contains the default 
values. User can change graphical parameters by changing this object

The object consists of several layers refering to different plots and different
properties. Here an indicative description

gPar$genome: prameters here refer to the plot produced by plotGenome

graphical parameters: see ?par

$colors: specify colors
$cex: specify relative size  - points, text...
$lwd: specify line width
$lty: specify line type - solid, dashed
$mar: specify margins

gPar: An object with the default graphical parameters

Description

Usage

Arguments

Format